Applications available on Github
- Shiny App for Single Particle Tracking Protocol. User may upload CSV or RDS file. More information available in the application. (https://github.com/kjcook13/particle-tracking)
Research Topics
Statistical Analysis, Intracellular Particle Movement, Molecular motors, Applied Mathematics, Computational and Molecular Biology, Single Particle Tracking, Brownian Motion, Bayesian Statistical Inference, Machine Learning, Stochastic Cell Regulation, Stochastic Processes, Parallel Processing, Modeling and Simulating Biochemical Reaction Systems, Model Reduction, Cell Extinction Analysis by means of Periodic and Non-Periodic Boundary, Conditions, Chase-Escape Models, Applications of ODEs in Computational Biology, Population Modeling.
Mathematical Models of Intracellular Transport
Lab Work
Skills: DNA and Protein Gels, Western Blot, Cell Culture, Fixed and Live Cell Imaging, Live Cell Imaging with Fluorescent Microscopy, DNA Corona Interaction with Polystyrene Nanoparticles and Lupus Microparticles, TiO2 Transport on Human Lung Cells, Machine Learning, and Protein Corona Formation.
Tools: ImageJ with TrackMate, Igor IV Reader, Scaffold 4, Olympus IX71 with the Andor iXon+ and Olympus TH4-100
Tools: ImageJ with TrackMate, Igor IV Reader, Scaffold 4, Olympus IX71 with the Andor iXon+ and Olympus TH4-100
Programming
R, MATLAB, Super Computing, OpenMP, Cytosim, NetLogo, Python, Maxima, Fortran, Mathematica, Maple, Java, BioNetGen, ImageMagik
Recent Research Programs
MSRI African Diaspora Joint Mathematics Workshop (ADJOINT) (June 2020)
- Project: COVID-19 modeling
- Video Interviews: vimeo.com/503623927
- Project: COVID-19 modeling
- Video Interviews: vimeo.com/503623927
AMS Mathematical Research Community - Whispering Pines, Rhode Island (June 9-15, 2019)
- Stochastic Spatial Models - Project: Chase escape problems; Analyzing the coexistence, escape, and extinction of particles |
Q-Bio Summer School - Rice University (June 11-25, 2018)
- Course: Stochastic Cell Regulation - Project: Analyzing the first time passage of biochemical systems using spatial analysis |